| | | Deletion (frameshift variant +2 more) | Nephropathic cystinosis +7 more | |
| | | Single nucleotide variant (splice donor variant +1 more) | Ocular cystinosis +3 more | |
| | | Single nucleotide variant (intron variant) | Nephropathic cystinosis +3 more | |
| | | Single nucleotide variant (intron variant) | Inborn genetic diseases +3 more | |
| | | Single nucleotide variant (missense variant +2 more) | Ocular cystinosis +3 more | |
| | | Single nucleotide variant (missense variant +2 more) | Nephropathic cystinosis +3 more | |
| | | Single nucleotide variant (intron variant) | Ocular cystinosis +2 more | |
| | | Single nucleotide variant (intron variant) | Ocular cystinosis +3 more | |
| | | Deletion (inframe_deletion +2 more) | Cystinosis +4 more | GPathogenic/Likely pathogenic |
| | | Single nucleotide variant (intron variant) | Inborn genetic diseases +3 more | |
| | | Single nucleotide variant (5 prime UTR variant +1 more) | Ocular cystinosis +3 more | |
| | | Single nucleotide variant (missense variant +1 more) | Ocular cystinosis +3 more | |
| | | Single nucleotide variant (missense variant +1 more) | Nephropathic cystinosis +4 more | GConflicting classifications of pathogenicity |
| | | Single nucleotide variant (missense variant +1 more) | Juvenile nephropathic cystinosis +3 more | |
| | | Single nucleotide variant (missense variant +1 more) | Ocular cystinosis +3 more | |
| | | Single nucleotide variant (nonsense +1 more) | Nephropathic cystinosis +4 more | |
| | | Single nucleotide variant (missense variant +1 more) | Nephropathic cystinosis +3 more | GPathogenic/Likely pathogenic |
| | | Deletion (inframe_deletion +1 more) | Nephropathic cystinosis +2 more | |
| | CTNS, CTNS-AS1 (R152W +1 more) | Single nucleotide variant (missense variant) | CTNS-related condition +3 more | |
| | CTNS, CTNS-AS1 (L158P +1 more) | Single nucleotide variant (missense variant) | Cystinosis +5 more | GPathogenic/Likely pathogenic |
| | | Deletion (splice donor variant) | Infantile nephropathic cystinosis +4 more | GPathogenic/Likely pathogenic |
| | | Deletion (splice donor variant) | Nephropathic cystinosis +4 more | GPathogenic/Likely pathogenic |
| | | Single nucleotide variant (intron variant) | Inborn genetic diseases +3 more | |
| | | Single nucleotide variant (intron variant) | Inborn genetic diseases +3 more | |
| | CTNS, CTNS-AS1 (G197R +1 more) | Single nucleotide variant (missense variant) | Cystinosis +5 more | GPathogenic/Likely pathogenic |
| | CTNS, CTNS-AS1 (A212T +1 more) | Single nucleotide variant (missense variant) | Inborn genetic diseases +3 more | GConflicting classifications of pathogenicity |
| | CTNS, CTNS-AS1 (T216fs +1 more) | Duplication (frameshift variant) | Nephropathic cystinosis +3 more | |
| | CTNS, CTNS-AS1 (V221M +1 more) | Single nucleotide variant (missense variant) | Ocular cystinosis +3 more | GConflicting classifications of pathogenicity |
| | | Single nucleotide variant (splice donor variant) | Ocular cystinosis +4 more | |
| | | Single nucleotide variant (splice acceptor variant) | Inborn genetic diseases +3 more | GPathogenic/Likely pathogenic |
| | CTNS, CTNS-AS1 (R228C +1 more) | Single nucleotide variant (missense variant) | Nephropathic cystinosis +3 more | |
| | | Single nucleotide variant (synonymous variant) | Ocular cystinosis +3 more | |
| | CTNS, CTNS-AS1 (Q231K +1 more) | Single nucleotide variant (missense variant) | Ocular cystinosis +3 more | |
| | CTNS, CTNS-AS1 (V233fs +1 more) | Microsatellite (frameshift variant) | Cystinosis +4 more | GPathogenic/Likely pathogenic |
| | | Single nucleotide variant (missense variant) | Nephropathic cystinosis +3 more | |
| | | Single nucleotide variant (missense variant) | Ocular cystinosis +3 more | GConflicting classifications of pathogenicity |
| | | Single nucleotide variant (synonymous variant) | Ocular cystinosis +3 more | |
| | | Indel (missense variant) | Nephropathic cystinosis +3 more | |
| | | Single nucleotide variant (synonymous variant) | Nephropathic cystinosis +3 more | |
| | | Single nucleotide variant (missense variant) | Nephropathic cystinosis +3 more | |
| | | Duplication (frameshift variant) | Ocular cystinosis +3 more | |
| | | Single nucleotide variant (synonymous variant) | Juvenile nephropathic cystinosis +3 more | |
| | | Single nucleotide variant (missense variant) | Ocular cystinosis +3 more | |
| | | Duplication (frameshift variant) | Cystinosis +4 more | GPathogenic/Likely pathogenic |
| | | Single nucleotide variant (missense variant) | not provided +4 more | |
| | | Single nucleotide variant (synonymous variant) | Ocular cystinosis +3 more | |
| | | Single nucleotide variant (synonymous variant) | Nephropathic cystinosis +3 more | |
| | | Copy number loss | Ocular cystinosis +2 more | |